According to the country's civil aviation authority, operations will resume at 5 PM UAE time on Friday.
On Thursday several UAE carriers were allowed to leave the country.
However the planes were flying without passengers with pilots only permitted to bring the aircraft safely home.
Air Arabia's flight G9825 was the first plane to leave Peshawar, bound for the emirate of Ras Al Khaimah.
Emirates flight EK637 also took off from the city, heading to Dubai.

US hosts Lebanese and Israeli envoys as Israel presses war on Hezbollah
US, Iran may resume talks this week despite port blockade
Around 250 missing after Rohingya boat capsizes in Andaman Sea
Italy's Meloni suspends defence cooperation deal with Israel
US-sanctioned tankers pass Strait of Hormuz on first day of US blockade